Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10000038 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	297275
Total Scaffold Genes	279 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	202 (72.40%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

297275

Total Scaffold Genes

279 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

202 (72.40%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000687	Metagenome / Metatranscriptome	937	Y
F000954	Metagenome / Metatranscriptome	822	Y
F001885	Metagenome / Metatranscriptome	622	Y
F008368	Metagenome / Metatranscriptome	334	Y
F011166	Metagenome / Metatranscriptome	294	Y
F073828	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000003817	F001885	AGAAG	MPQEFLSLAIWEPLPGMEDASLATMGELSGLISKKGYGRDLLYRGRESHYVLLRYWNSEDARQIALEDPELLRCWARLGNEIRTLEVYEKLEAFSEEKKT*
Ga0073928_10000038172	F073828	GGA	MNSRRHIRFMPVLAALVLISIACQKKKAPQEELLPMDRVAISPVGESQTILHKTFSVATSVNYPFEIPAHAAMPHLQGSYKSFVKEVGVQSGDETANVDFLILNEDQYNDFSHGKPGEAVFSADASHDQDVNFSLPSTQDQPRKYYLIFRNSPGGVKRKLVQADFTVAF*
Ga0073928_10000038192	F000687	GGAGG	MQTQEIAGGTKLNNGNGHVEEVVRQAHEELRQLLQQRAEVMRRIGTIKQTIAGLANLFGDAVLNDELLELVDRKSSGRQPGFTKACRMVLMDANRALSARDVCDRIQQKAPPVLARHKDPMASVTTVLNRLVAYGEARAVSLDSGRRAWEWVADSEAGSASMRAQA*
Ga0073928_10000038259	F008368	N/A	MNKADSDRIQELCSLIAVEQDRGRFLSLVEELNRILEDKNKRLPNGPSERKPG*
Ga0073928_1000003850	F000954	N/A	MKRGLLIFAAVVLAPVLLVSIVALAANEWRQIGSTAGGDQVLVSAISAPRHGLRTAWIRVEYKEPTRLPQGGPFVELRARVRFNCADSGAAPGLVANSEWFYSRDHSGKLVVSKKTRRDDQFGQSVEGDFAGIAKDFVCKQK*
Ga0073928_1000003870	F011166	GAG	MKVSKLVWQWAKNIHRQAALDSLRNVLAIVGGATILADFGTVKAWLLLPMAAVAFLIWRIDYERHFHGQNVEEAKPGQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10000038

Overview

Ecosystem & Geography

Associated Families

Sequences