Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10000044 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	278074
Total Scaffold Genes	256 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	187 (73.05%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

278074

Total Scaffold Genes

256 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

187 (73.05%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F002012	Metagenome / Metatranscriptome	604	Y
F002461	Metagenome / Metatranscriptome	557	Y
F003337	Metagenome / Metatranscriptome	493	Y
F010883	Metagenome / Metatranscriptome	298	Y
F019706	Metagenome / Metatranscriptome	228	Y
F055027	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000044113	F002461	N/A	MQAQEDSGETPLGDVARSLRKKPASSEAVIDNDNLSKVVDDAASRRVAGTSVVFSLDPGGKSFHVSSPDVTCSLSFSAKTTALLADPVVLDELPRSELAKLDGPATIDGDSLQVSMHNGTSWDLREIVIGLTIVRSPQPGESRSQPGQPRIFPAAAGDAAQSTADPYQKQPDMTMLLRVKGSAAPSATATFRTPLNFALFPDQEWHWAIVRAKGIAPQTPAEMPAGQDEQKGMSPSAATTEVSPQNPPSVAPPSNPDAAVAIH*
Ga0073928_10000044126	F010883	GGAGG	MTSSAHDEAWELIALGDDLSDAQRTKLRVHLQECEACRGYAEAAGRVVAAVRSLPLAADSRLVRATQMRVRFHAGRLREARERLWFVGLACLGVGLSATLTLPFLWRLCAWVGGWVGVSPLVWQASFVFIFIAPALGVSILLLARGTHLTDNAEQSRPWRQES*
Ga0073928_10000044136	F019706	N/A	MNTPLLAPPLSALDELKLDVLKLNELKKTGEVKKKRVLLVDASNVKRDLRAEVMRKLGIDVDCAADLAEARSWWRADLYDLVLINLEKGRGHRDRFCDDVRGATPPQRLAFLVGKPEYLSASPSADEELLLQDTADQILVSDVKAALSSNVGDLSQRWGILEASRRISAVRSACSARTRAMRDRPVPPRDSEARPFKRIADSTTLDDLLREEMQ*
Ga0073928_10000044143	F055027	GAGG	MAITFMAVVAGLIFSIAVALLTEELIFGQVCRVFFARPLAPRSAPPKDRQSR*
Ga0073928_10000044241	F002012	N/A	MTVSSLYFALFKLIRGGFVYAGAARGTWVASAAHPLRDRPAPVAALVLVQRLSSHKNDIYNVLWAVVFGFATLNILSLAARRFEPNRRGLTFGELMAVLVVLLSIFLLGWEMLGMFHIFPIKLQR*
Ga0073928_1000004440	F003337	N/A	MRVPVIRTFVCWVMMSMSPAALAASDPGSAVLRSNGGVWVNGTEVVASIVIFPGDLVETRPGFVANLDAEGSSVLVQSESVVKFQGNYLDLEHGGVSVGTSTLMSVHIKCMRIEPVAAARTQYDVIDRTGAVHVAARKNDVNIKQSEGLRKPAAGNSSAQSATVHEGEQTTRDETTACGAAERPEGPGHALNTKWIEIGGGAAGGVIALCLILCRGSSPSSVSPSNP*
Ga0073928_1000004470	F000269	AGGA	MKSSWSFRDCWLIAGSLLLSVLPAASESPTKPTDVPATVIAHLPLPQAAGNQMLLQKENGKQYLYIQQAGKTGFMIVNVSHPEEPSLLKRTAESNQATSGNLEMVSPDIAIAEAPEKTPNTLSSNAHPTETVRVLDLSDPKNPKTLETFNKVTSLLPDGGHGLIYLTNNDGLWILRYSRPSRLEPAKKKPPCDSSSAIQAMPPDCQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10000044

Overview

Ecosystem & Geography

Associated Families

Sequences