NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073928_10000499

Scaffold Ga0073928_10000499


Overview

Basic Information
Taxon OID3300006893 Open in IMG/M
Scaffold IDGa0073928_10000499 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92352
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (79.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001083Metagenome / Metatranscriptome783Y
F001247Metagenome / Metatranscriptome737Y
F008825Metagenome / Metatranscriptome327Y
F012243Metagenome / Metatranscriptome282Y
F016839Metagenome / Metatranscriptome244Y
F054207Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0073928_1000049933F012243GGAGGVRAYGTVPYFFSYAAFAVVADTVRFAVHNHPSTYYATYWITEAGYDILGILVMYEVLRTLLGTFTRAWWARLIFPSIVLIGIVMSLARTDAVPTRIVGLPHYIVAGEIAVRFMQVFVFAISVTLVPLLGLRWRQYSFGIATGFGLYATVMLLTTIKFSDFGTTFKLLWGWTSLVAYSVAVLIWIWFFSIPQKVTTSELSAPAPGVLKEYKDALRRMR*
Ga0073928_1000049934F016839GGAGGMFSIILTWLIVAWGALSCIYMLRCAWRRFPKRDVDDVIPFLYPVDISLAESLLDPAAEFEFRWKLQPPQFREAQRKRMRLYLELTRRMSHNATVLVAYADAEKNSQDPRRVSLASTLQEKAVEVRLYALLTRFKLRLRLLLRSEILISKPVLPNLRTACDIDGLQTYGALKIAAAAAFVQLPPEELDSLTRNL*
Ga0073928_1000049945F008825GGAGMNCVELQDSLAEVEDASTVEQRAHLMDCPACYALVRELDLIIEAAGRLQAADEPSPQVWNSITTALREEGLIRPQRATQPLVSSFSARWGAARWLVPAAAMLLVALGLYVKQQSAPRPIAEQAAVVAPMVKASDLNDDDLMQEVAVNSPAMKGQYEDNLRQVNDSIREAQGFVDESPNDADARRSLMDAYHQKSMLFEMAMDRALP*
Ga0073928_100004995F001247AGGLKSKTWNVIANTGKQASLESGLEKKEIQKPPQISSKEFIHWLAAEGRVDDDSLRSLFKQ*
Ga0073928_1000049965F054207N/AMLKRNLRVLKWLGTTPAIAVCTACDREFKVPLDILKRVGGAVENLKLQFSEHQCKKDEADSTAD*
Ga0073928_100004998F001083GAGVLESLREDLAYARLNNGRRVLDVADLRQYIYEPMGRIRTTSLAIDGLYRNNNGDGQDISKSNGHNGKAHLDKIWHERDTEAGHLRDEL*
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