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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006893 Open in IMG/M |
| Scaffold ID | Ga0073928_10000629 Open in IMG/M |
| Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 79253 |
| Total Scaffold Genes | 78 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (78.21%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000249 | Metagenome / Metatranscriptome | 1459 | Y |
| F000426 | Metagenome / Metatranscriptome | 1154 | Y |
| F001709 | Metagenome / Metatranscriptome | 648 | Y |
| F004329 | Metagenome / Metatranscriptome | 443 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0073928_1000062937 | F001709 | GGAG | MPQEISVSYQAIKSKVYRLIDALVVGEKNEAEVQESIRRWWELIHPADRPIAQKYLFTILERSRLALDSVEGGLIEATENEAFRPSEPSKVLKMVGRVVKHSTLSSPPI* |
| Ga0073928_1000062938 | F000249 | GGAGG | MKKMGWILVFPVLFSMFGFAQSEAPASASNVAQAEDRMFFPRDTFWGWAQFDLAPPHNEIDPNLCAGNAGQYGGVNAPCSLFARYMLSGMLEVRPFGRGQLRRFMVFGAPAFLFGKTIPQTLYTWSPDAIGIEHSWGVGIFIAKGFEFRVTQHFLFDRLGARSTNLGPADLGNNGPWGRYMTVGVHKSFGTRRW* |
| Ga0073928_100006294 | F004329 | GAG | MTTLLSAIATLGLCAFQFGDRSELNKMPYTQVQPLIFDLAKARRLAKQGNIDFLVGQTEPGETVKLRGEVTEANCYLGIHMHDYDHAFCAKLCAAAGGPLVFIPDQGEDLFLVLNEQNGVRLPESVLDRIGVPGIVLKGKVLEAGGMRAVAVDGLAP* |
| Ga0073928_1000062959 | F000426 | AGGGGG | MKDIHEVLRQKQTKYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLMEGDEASPHSDAMAAKAGSGSSTAGKASRSTAPRWP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |