Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10000795 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67182
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (87.84%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

67182

Total Scaffold Genes

74 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (87.84%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001558	Metagenome / Metatranscriptome	671	Y
F001596	Metagenome / Metatranscriptome	666	Y
F001643	Metagenome / Metatranscriptome	659	Y
F003233	Metagenome / Metatranscriptome	499	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006399	Metagenome / Metatranscriptome	374	Y
F006672	Metagenome / Metatranscriptome	367	Y
F008980	Metagenome / Metatranscriptome	325	Y
F017708	Metagenome	239	Y
F017965	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000079511	F001558	GAGG	MLRVQTQELDGALICRLEGRFTGEGAEQVRTLVTRCDGKLELVVDLTDLMFIDAIGEEVLLFVKRLGAQFVAETSYSRDVCERLQLPFIGKRKSNMQVPGNSDGNGHRPRRR*
Ga0073928_1000079512	F008980	GAGG	MMGAATRNLPEPPARDYIGRVFSQHREELEWLANFLTGDETIAAACLVDACALAESENPGFQEWVLKCACLATIRSAVQIQQRRIVQLSFAYKQRPCIHGGHTALSSDWREILVEESSVVIARLDVLCRSALVICGLEKRSADEAAVLLGIDPAGVEGAYCAAIKSLEVISCEQFQRQNDFAAVYN*
Ga0073928_100007952	F006672	AGGAG	MQALDTLPGESNTSIISSIINWVCPQCGGRMSEFQREGRCRRNWLAEWEWANQTPRSLKSQRRHTGRSMR*
Ga0073928_1000079542	F017708	AGGAG	MAKVIEFYIPKNFRKPLRAEAQPQLGKIIEFCPQTKRSA*
Ga0073928_1000079547	F001596	AGGAG	MSWFHSSTAAVVARNYASSAEIVACFQDQRNVLGRLAFLITGDQATAEQAVVQACEMTLQGNSPFRDWLFEWAKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQSDVEERAASLDFILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVCRAAVLGANCHVLTWLHERHVKPVEENHDASPLCRNAGTGAE*
Ga0073928_1000079550	F006399	GGA	MATPALNSRVQSLVTEYGVFWQFWPQFEQTDGERRLVGFEVELIGSHTSDLNHVDPACPTCRHVRSVLLAIVNLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVFLNRANGQSFETDLLNEVKTFLNRWGIHQR*
Ga0073928_1000079551	F017965	AGGA	MSEEIEHRDALYLFACHLEWLTKRNLAAYQELLAALDDHDGDIRRLAESLLHRSSPRLERTATSIESW*
Ga0073928_1000079553	F004823	AGGAG	MYATKAVNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGHKSELLLNEQDWESLKAIDSPFRRTAQHA*
Ga0073928_100007956	F003233	N/A	MIRRVRYDVQLVRGAPMKLRTFLVAIAILGTVLHPAAAQAKKKTTQVDAPPLEPVLSGTSMQSNAVLSDVIARKPEMPLGPQDILKSYEIAMSLVVEKTSADFSVIVRTQQANQISGEQAEYLLLQSYQIAMMQYQVLSALHDVLKHDIDEAARRQARQSLKTTSSDTVLMVPFPGSVSAYR*
Ga0073928_1000079565	F001643	GGAG	MLGELMNIPTDTLIDMLYMILAGDFAVTANDATEIEQIQRELQRRGGEQRWIFQAVN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10000795

Overview

Ecosystem & Geography

Associated Families

Sequences