NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0073928_10009338

Scaffold Ga0073928_10009338


Overview

Basic Information
Taxon OID3300006893 Open in IMG/M
Scaffold IDGa0073928_10009338 Open in IMG/M
Source Dataset NameIron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11969
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011317Metagenome / Metatranscriptome292Y
F020868Metagenome / Metatranscriptome221Y
F069098Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0073928_100093383F020868GGAGMTSKTFPCPVLFLSFSLLMTVMGASYLCAPGPAGAQSKQAASAAGSTQQPAAEIRGTWSGTFFSKHSNVASFTMTVVINPDSRGRLIGSSSLDSDCLKGAQLEVTVTGSKVVLAGSDDEGDNITVRGTVDKTGTLLKASYILNGSATGRCETDGGTGSLARR*
Ga0073928_100093386F069098N/AMAVVWQKFHILSRAQVFIVASVCAAAIALAVAVASIPADGTSWSRFLGPSRQLDPFINFGSAFVAVLPIFLGYYHLARLGALLGLGISVLAAFLTQVCAGFVFGFRVVGPSVVLQEATYVGLWLLLSMLVLSVHMKLSNSHALRDAQRLLRSADQTP*
Ga0073928_100093388F011317N/AMCAGACVWSKIGAVVFGVSQEDITAYGEKHGTEEFKWRDCLISCKFVLEKGNLHIPVFDNFMKLECQKLFGYRAS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.