Basic Information | |
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Taxon OID | 3300006893 Open in IMG/M |
Scaffold ID | Ga0073928_10010634 Open in IMG/M |
Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10907 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (88.89%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Banff | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007233 | Metagenome / Metatranscriptome | 355 | Y |
F015496 | Metagenome / Metatranscriptome | 254 | Y |
F033134 | Metagenome | 178 | Y |
F037842 | Metagenome / Metatranscriptome | 167 | N |
F044617 | Metagenome / Metatranscriptome | 154 | N |
F065986 | Metagenome | 127 | N |
Protein ID | Family | RBS | Sequence |
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Ga0073928_1001063410 | F033134 | AGGA | MKQEQESKQLITFSSLHIEVLGPRELGNSQQAIRGVTEFLHSIELDVRNLLRERAETSPILEGFRLRFG* |
Ga0073928_1001063411 | F037842 | AGGAGG | LKQKSVKTRGEGVEYPALISKVIRQVRFVNDDDYTALTIEFDDSTLVSFRFRASIAFSIDPELSTVEGGNIVRWRQLKTRPVVRRVARK* |
Ga0073928_1001063413 | F065986 | GGA | MSNIAKRQGRMIRKGKEVRFGSVRIDLIGPTALLHNREAKGAAIDFLRTEILASKDWLKDCARISPSLKRFRLVSIRK* |
Ga0073928_1001063414 | F044617 | AGGAG | MSTSPQPSRQRPTVTAITAEERRKLDERVRDKHQRLRNRYPEIYGKVVDWIHHYIEDGTLYICIRFQDKTDFAIEFSPQIVRVGTELCDSATGDFDVIRNYYQEERE* |
Ga0073928_1001063415 | F015496 | GGAGG | VYSADLVRQICGEVVNEKDPEKAQDLMSLLQAVIKDDQEDIRIRMAFLAKKYTFISDSKAAD* |
Ga0073928_100106349 | F007233 | GGA | MANRKQREHQRQLNQDTFSDGIKGKVVEAVSISNELECRYISLEFGDKTELTITLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD* |
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