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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006893 Open in IMG/M |
| Scaffold ID | Ga0073928_10026047 Open in IMG/M |
| Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5784 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001010 | Metagenome / Metatranscriptome | 807 | Y |
| F002004 | Metagenome / Metatranscriptome | 605 | Y |
| F002288 | Metagenome / Metatranscriptome | 574 | Y |
| F036259 | Metagenome | 170 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0073928_100260472 | F002004 | GGA | MREIANSRRRLGEHISRALNKIRKPSTAEEITELLNRDLELEDRPFQKKEVAEWLRNTENTTFTLYWSRTRPRR* |
| Ga0073928_100260475 | F001010 | AGG | MQNTGDPRTRGEIAALIEHVLSDRPGEWHVSIIGSRANDSWEMKVEGPEGFERSYTLVGSAGEHQPVAIGNLLGKLLPASKS* |
| Ga0073928_100260478 | F002288 | GGA | MGEADGVHKRRMFRWPKEARELARQYKERTSRSQEHHEADRRTLVTKLAEISGNPRDACLRFLRELGVNHKRAYREWTRPEQQRLLDLITAMPVEEAAKILRRPVGSVRSMLHRLGMGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRSLTTAGTKANIIHADDFCQFVKEHGRAVVSRRLTYDALWFVQNYVFPPSHTELLSVRGTYKKHDAGDETQPDTESQSACGSEEEDAQEG* |
| Ga0073928_100260479 | F036259 | GGAG | MFGAHRRGFAWKEVAEVLYITRTAARVTFWREIKRSRSKKRESPPPAIVIRGESDSDTLKHRKPRASR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |