NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066376_10023766

Scaffold Ga0066376_10023766


Overview

Basic Information
Taxon OID3300006900 Open in IMG/M
Scaffold IDGa0066376_10023766 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4180
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016597Metagenome / Metatranscriptome246N
F023963Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0066376_100237661F023963GGAGMATPSNVHQKSIEFDEVTLFSIDKAVYDWFNTKHATNIQGRRVPVMFGSWERFAQMQDNKQDDNLNRMRDPSGMLILPLISIRRGDVTYNVDRFVFPQADGGPRIQISRRVAMSNFDANERVPFDGPHMYSSSRRRSDAPVMEVTTIPWPDFVNVTYTITFWSSYVRHANYFNDRIWQNAYPQDLTYKGYYFYAFIDSGTNENNEENYTDEERIIRSSFTMAVDGYILKKADASVTRTSSKMLMSESYMESPRIDTPGHKSIDEILTHERAKAPHQYPEPMPPGLGKVNYGSLNNSDFGLDKYNQPQQARVGGGKVDYSNLSDYGLNKYTEM*
Ga0066376_100237662F016597GAGMPLDKDSIPHTWEGTGNHGTYPFASSTGDSSYGLFFTPREMELFNDYNTELLGIIAQTGITYYRIEPDSSDPNSIYGESEVKVTRNPVQVHCWVMLDEPETETNSFTVDTRRRIELYMHKDRLTELDLVPRMGDFVGYDNQYFEILRASVPNFVFSYPQTKLGVIVRCLSVREGVFDPDRDFVNKEYVGDAENPY*
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