NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066376_10074405

Scaffold Ga0066376_10074405


Overview

Basic Information
Taxon OID3300006900 Open in IMG/M
Scaffold IDGa0066376_10074405 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2139
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029898Metagenome187N
F033643Metagenome / Metatranscriptome177Y
F069450Metagenome124Y
F096037Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0066376_100744052F096037N/AMKTTVYAWGAQVSNVLHIYAGMTTQKDLGIRLNGVKQIIVGAADSWFGGPQNSAIGAWNLDLIYADSSQNYSRHKEQRAINAGWAVEQKYRDASLPVRSLNSNRAVGLGSVQKYLDRTNSVYGHVLLHDTELDTNLNGCVFEAIESWIKEKVQEKPNLKRKFEAALIAKQQKQALIANITKVLGLEPVLA*
Ga0066376_100744054F069450N/AMLDKFGASAILVSVMSNIDQIYGVPSWERVRELKKLEAQYPKADWSEGSYNDQIAKLADKKRKRYGTTCSYNGY*
Ga0066376_100744055F033643GAGMFSASEIYPGFNITFANGWEISVQWGREHYCANRDNSNKKSRTSTTAEVAIFAPDKDGFPREWWSYDEDINRVVEQPEETYVNGHLTTDQVANIMAIIAKRPSPLVGVSQNSA*
Ga0066376_100744056F029898N/AVFRKIVLDIVGQIGYTIDSVMRKIIEMIKKIMKKSPVRTQELTYQREYDGEVKNYLVNIFEDWDSYYVGYTYDTHGVNCGVKRFNKGNIQKMKAAKRNFALVNV*
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