NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066376_10141324

Scaffold Ga0066376_10141324


Overview

Basic Information
Taxon OID3300006900 Open in IMG/M
Scaffold IDGa0066376_10141324 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1473
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093988Metagenome106N
F095617Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0066376_101413241F093988N/AMKVNRHDRLHSVFNLMLPKTIQYKRNIIKIRYMGRKESQDLDCVGMFVPADNEILIYKNQSMKNVLITFLHELYHLLCSKDGINVARLGEEKLVDKLSESFVRLLIHNPKLLGVFQKFLK
Ga0066376_101413242F095617N/AMNKITLKWEEILAGATTGLTREIESLRQGIDWGHGANFDTYTKWGMTISGALAEMALAKMCETYFSHSVNNFHGSDLTINGKSVQVRSQLMSKKTHNLIVRKNRKKDDYYFLLLDDFPTFYCAGYAAPQNVERIGQWTNFGHNSRPFVWSIGKDKLTPLEKFKYER*
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