Scaffold Ga0075426_10225649

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075426_10225649

Scaffold Ga0075426_10225649

Overview

Basic Information
Taxon OID	3300006903 Open in IMG/M
Scaffold ID	Ga0075426_10225649 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1361
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065057	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075426_102256491	F065057	AGGA	MDPIWYTIRTVVTVVMAGIGGLLLWAAYLVAGNVTGAAIAWMVLLAVAIPAGFFAMFTIVGWQRSTAAQAKPSPLIAWCGDPRHYAVLWLAFVGLLFGGAYQIVQEIKRGDAERADLQAYHRAVRDTLFDACWNRAGQSFREEAGSGDVSLRPRLMHYCTCLDIEVEKRFTPEQFAAVPKERWWARGDDKIDRIVQQCRISDSSFVRAALTIRKNGGNPESDAMQPK

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