Scaffold Ga0075424_100583752

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075424_100583752

Scaffold Ga0075424_100583752

Overview

Basic Information
Taxon OID	3300006904 Open in IMG/M
Scaffold ID	Ga0075424_100583752 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1193
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005849	Metagenome	388	Y
F070514	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075424_1005837521	F070514	N/A	MKCPACCSEIDNRSYRCRECLGICSYRRLCWRYRYIVFVLIALIGFWTVKGYVMRWHANDYDKLPEGALVSDATT
Ga0075424_1005837522	F005849	N/A	TGQPDIVKLLGKQSTDVAQMQANTSSKLNSVKQELKALLDPQDPLTKARAEAFMKGVAERIYVINAEGDKLVDVGPNGEKIVSETVRMLSQLPTLGAPRLVTLRYSDIGGTEEDAREKKSGVRNPAYAHSIVVKMGVQQNFSFFDHFEELLFDRIGTPPRSSAANVEQIRQSTQERIQDTIFEMNKFVVDKNPMVGLAWKDISDAVQAKFKDVPEPGRTKQIEDLTRQTYYVYIFLSLYARMDDLRSRGIMSPNDEMILEWKRSWLPNLMTSELGRWMLDNNLMEYYSEPMIKDLREATGATGSSPAPPASAR*

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