NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075436_100058429

Scaffold Ga0075436_100058429


Overview

Basic Information
Taxon OID3300006914 Open in IMG/M
Scaffold IDGa0075436_100058429 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2663
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002013Metagenome / Metatranscriptome604Y
F025365Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0075436_1000584293F025365N/AMVRRHPLRMSRAQSWRTRVPKNTKSKAECDGNTALTQIAAKQRRKIAKSIKKKYARFRRKYPEVHGKVVDFITNSIEDGILYFTVRFTDKTDFSLRYACDMFVVGADFCDFKTGNFEMIREYMRPILR*
Ga0075436_1000584294F002013N/AGVQRLKKSLKLFMETYHKSMAGLEGRRAIINLQFMLEMRKLEENDESYFEEEFNVWLSDEPLTNEEICQLMRTVERERKLEGKPPLVQFLARSKRPKKTPQKAERLHSSRKVNGSPTSASDVKSTELEDARA*
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