NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075472_10057881

Scaffold Ga0075472_10057881


Overview

Basic Information
Taxon OID3300006917 Open in IMG/M
Scaffold IDGa0075472_10057881 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1846
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F012669Metagenome / Metatranscriptome278Y
F016528Metagenome / Metatranscriptome246N
F028145Metagenome / Metatranscriptome192N
F045700Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0075472_100578812F012669N/AMNEQTYMKLGDVVKRPVFDVKNINRENPRFKHLVDSYQKWNSDNDIDEPRSTYENDIIECLGHYDLDGFALAQHLKDYVYVEPDSELVHILDDVLFVKSSLEREMLAQWVKENFLTISDDVVGKKVNAKQGFRKYENHYITGIKPETYQVTISDDPKKYGGYIVGFESVTFVD*
Ga0075472_100578813F000962AGGMNAHVPEEIKSKYPYMEFRGKQRQMNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKVS*
Ga0075472_100578814F045700GGAMNIRPSQCFECETGTYKDVTVNYFSQLSGGRSLVTKDVTIQRCDTCGAEILDSKASKIIESNIEHNFLGYYERTRSRRN*
Ga0075472_100578815F028145N/AMKLFLVFFINLALSLLSSILLYKLFKVDVSPTIISIGLIVAYMCLPQRFHDWIAEK*
Ga0075472_100578817F016528N/AMINNNELFAKILSENPLPYRFGDKVNTNRGIGYISGYNFKEREKTWKFTIRPFGLTNYYIDVETVYGKTD*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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