NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079216_11209698

Scaffold Ga0079216_11209698


Overview

Basic Information
Taxon OID3300006918 Open in IMG/M
Scaffold IDGa0079216_11209698 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Utah to study Nitrogen management - NC AS100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)608
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: North Logan, Utah
CoordinatesLat. (o)41.7655Long. (o)-111.8143Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002483Metagenome / Metatranscriptome555Y

Sequences

Protein IDFamilyRBSSequence
Ga0079216_112096981F002483N/AMLEPRRHPSYFVVAGIDLRAEMTRLRTLPVFAGGALARTAPRLRIRRASGRPNRLGFAVPAEWRLSVTSYPGIRAGDALETLLHELVHLHVGRQPGAHAWHGRTFKRTLARAMAEAYGVTGVSTRGALHGAYAAAIEARAEPEQLRLAG*
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