NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070746_10012805

Scaffold Ga0070746_10012805


Overview

Basic Information
Taxon OID3300006919 Open in IMG/M
Scaffold IDGa0070746_10012805 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4715
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043343Metagenome156N
F045686Metagenome152Y
F087048Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0070746_1001280510F043343AGGMQWVVENHPCYICNLEGRLNYSQIQFHHLQGKYRIGAMIRDDSVGIPLCFTCHSIFHKRGERLYWEEINIDPKVYADELWEEYNETRKL*
Ga0070746_100128055F087048GAGMQKPQNYIIINNDDGTFSAYVNYGVFETKEDAEISLQYVMDIMGYKLQPEVTYH*
Ga0070746_100128056F045686N/AMNVYHITNKSISFFLNLFKFDTAPKGIDQFVEVEFKKQDREWAKIHFMSRQQ*
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