NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070746_10161670

Scaffold Ga0070746_10161670


Overview

Basic Information
Taxon OID3300006919 Open in IMG/M
Scaffold IDGa0070746_10161670 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1085
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F017987Metagenome237Y
F038646Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0070746_101616701F002738N/AMTIDTYGLTSDQYEEFFEKNIRFAAQLYLKAQNIIFSTGVSNADFKTILDLYSETVYATNDDCRRYQKSNNPEALKEATVEIFGITPTREELMAEVQSLSAKVDSLTDYISNLVTITTSGLEGIVTTLDKVD*
Ga0070746_101616702F038646N/AMTDDILEYARQLVANQPMKLRDHHKYDLEIPDDLHWELVRLGAELKMDYEVYAEEVLKMHAEDAISSRIVAKAHNDPSWVNKLKIECIEEEDESMTIHIEWDEKDPDLQYWTNLGAKGQENFILTALRSACDSVLSDHDN*
Ga0070746_101616703F017987N/ARFVLLYTNNGAQAPLSHWRYYKPKEVFTQHHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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