NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070748_1004057

Scaffold Ga0070748_1004057


Overview

Basic Information
Taxon OID3300006920 Open in IMG/M
Scaffold IDGa0070748_1004057 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6631
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009856Metagenome / Metatranscriptome312Y
F015079Metagenome257Y
F036970Metagenome / Metatranscriptome169Y
F048232Metagenome148N
F072209Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0070748_100405710F009856N/AMKYWFEVEDAQRWGLPAAAVLAHLKYWIARNTEAGEDPCMTQSIARMQGHLPFLTFDQIRRALSKLEKADAIYRKSNGFDRRHTYCLAELPQASGEIATSKRQDCHIEEAELPRVHIETNTSKRTRENAREELEYQRPTEEEVVEYFRDIGGSDVADQLGQEFHTHYESTGWIVSGTPMAKWKPKARSWLSRMRNKQSNERRKGFNPTGFTPDGLKDFIANG*
Ga0070748_100405711F072209AGGMASRTLSLTDSTQLLLKGDSRNLTPQNAWEEGTNIRTALRLNPQMVRAWFLAELGRLIKFVDATKTIQDDDEMKETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHAGTREERKAILLTVEDLIDLGQIKPPE*
Ga0070748_10040577F036970N/AMTKYKRWVTAVNRAIVAEMAMQKKTQKDLAEALSIHPVTINRKLKDPGLFFVGELGLLCDALNIDLKNPPNYGTGAN*
Ga0070748_10040578F015079N/AMVQAQIESIQGKGDWKGKHGTMYTFEVAFNDGTVGEANAKSQEPPYKVGDEAYYEIKTDDQFGKKLKISKNPPPPGGFQQFQPAKQDPDKDKKMIRGMCFKVAGMAWANQYKHKSFELPHEVMVKDVISLAKKYEKAYNEWMEE*
Ga0070748_10040579F048232GGAMSKTVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKHKLRLEIARVQKALKELDPDGMFPP*
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