NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070748_1005041

Scaffold Ga0070748_1005041


Overview

Basic Information
Taxon OID3300006920 Open in IMG/M
Scaffold IDGa0070748_1005041 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5938
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015852Metagenome / Metatranscriptome251Y
F034543Metagenome174Y
F060835Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0070748_100504115F034543N/AMIKIPKISEVTAEANAKKITAYRIAKDTRLSTQTVYAYFKGERVSVRTQEAIINYINKY*
Ga0070748_10050412F015852N/AVAWQGCNSEAKTITKVVERPVPTIKYVDRWRTDTVRFVSKELVTRYDTIYSDKIVIRLDTMLLIDTFKIVETWLTEVANYDTTVNDIRLTWSNYQNRTENLKVELRKKPLGWALGVHGLVGLQSDFVENYKPLFGVGLQATVKKTYISANYGFNGQHFIGVGIGRNIINR*
Ga0070748_10050413F060835N/AMIYDTNPITREAIDKLLKKNASNQANLGTESTDLERFEAKVKWAELHRKIRTLDPEFAEMVQPQ*
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