Scaffold Ga0098060_1061127

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098060_1061127

Scaffold Ga0098060_1061127

Overview

Basic Information
Taxon OID	3300006921 Open in IMG/M
Scaffold ID	Ga0098060_1061127 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1100
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.63	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F031530	Metagenome	182	Y
F033836	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_10611271	F033836	GGTGG	MTISEYEFFGAGKYANAKDTRDTNSAGIPATRKPEEETSTKEERFIDMVNETEVKSAAFCALALLAGLCCALLLGCSTSAKVEGGAEIIEMKPLKMQELTYPAYDYDKICADCGFTEWTDSWCEAHMGSTAFCSASK*
Ga0098060_10611272	F031530	GGAG	MDFVVYKSEADDTGRLVELVRNRHCEVYEVIVDGIPVFNCEDYPQALHEYNMECV*
Ga0098060_10611273	F007343	GGA	MRVSELQPAAYPQSPSVEKPNSDAHALFTNDFNKNSFIEANGDVEIVWNNQYKYWAVPAFAESRAAYGEAKQRFCDQHGSE*

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