NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098060_1074497

Scaffold Ga0098060_1074497


Overview

Basic Information
Taxon OID3300006921 Open in IMG/M
Scaffold IDGa0098060_1074497 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)979
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086294Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0098060_10744971F086294N/ALTKCAKKGVTKLENGLKSGFKNADDAVLARGILKSGKFLKDAVSLRGLFGPAALAFTVAAEAGIVGYDMLASGKSFREAVGDSVFNYMLGDKTKINPEEEFIKRLKNIPGSPGQGFRGFTDEDINKMLVFKSKLKDMETGFSNYSDLININEKIEENTERQNIGSGFFPDEAFQLEAEKDRIQADIRDYNKVGTPRNVTDYMISDEGIKGGDALARGTLLAKENQLLGVNPTSKKGIESLEEDLIDTRFNLEQMYNPTKYDQNAKYFMSLPKSEQSKLMSYENMLDPFREKFMSKPKSEQSRIMSYGYPRYMEGGIASLNVNKK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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