NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098045_1036374

Scaffold Ga0098045_1036374


Overview

Basic Information
Taxon OID3300006922 Open in IMG/M
Scaffold IDGa0098045_1036374 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1253
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004163Metagenome450Y
F012625Metagenome279Y
F022314Metagenome215Y
F092859Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0098045_10363742F004163AGGAGMKQTLEQLKRIVLDLKQYFEKSLPLILIGVALGYTFANHLEAQTPKDIGFATVEDMSFLVQELKDCRDNAGTLDGSY*
Ga0098045_10363743F022314AGGMVKTREILKLGDIVRLVRHEPPEDPFHSFSTEQIDRMGVGLVVSMEELNSYKDIPEKKWVEYTILWSGLGEQLKHLGFDLIKITGAEI*
Ga0098045_10363744F012625GAGMDPVHNKTISVGDLVKEHTYRSKGRVGLVHEVISNYYLVVKWLDGSVDKRHRNKYEVTKIIKGEAYPNYLQDYIQGKRW*
Ga0098045_10363745F092859AGGAGMSDNNTDTITISENSEDKDTTVTIPLEFTAKLGVPQELIDEGNRALNRFKWTMFALVGGYIALNVYVAYLQVSS*
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