NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098053_1018892

Scaffold Ga0098053_1018892


Overview

Basic Information
Taxon OID3300006923 Open in IMG/M
Scaffold IDGa0098053_1018892 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1507
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013467Metagenome271Y
F036024Metagenome / Metatranscriptome171Y
F066274Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0098053_10188922F013467N/AMTFGELRNWVWCEGCLEWKDADEVNFVSIEEDSFGKDMLTFACDKCGNDNKNNIFQSSTRPRG*
Ga0098053_10188923F066274GAGGMMIELASDEIGWVKYALTRAASTMEGRDPDMTLKEEKILMRLVRKIEKQEEENLK*
Ga0098053_10188924F036024N/AMTTEYRIGRIGDEDTFLKLDEAQKICQAKFAEYISEIKYEDGEEAIDDYAWHIVTPERFEKDWENDERLKKTDEIKAKYKNLVKNNRVVFFEIDWN*
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