Scaffold Ga0098053_1084093

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098053_1084093

Scaffold Ga0098053_1084093

Overview

Basic Information
Taxon OID	3300006923 Open in IMG/M
Scaffold ID	Ga0098053_1084093 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	644
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis japonica group → Amycolatopsis japonica	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084704	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098053_10840931	F084704	AGGAG	MFDLKDVHIILVGCQRAEDYRHNLEIIRYNYPDIGTKLWITTVFNGDQNECPSGIGENTFIYLPENRGYGYGALDAFNEGLDYARCGYRPYVAIFNFDVWFLTQNGFRTAMDEFIESGKQFAAGYHQSHHWAMTDCMFFRKEFLEKLLPIQDRVLNSRKENGWLKKQMDGTQLGFENMEEWMLYS

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