NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098057_1015508

Scaffold Ga0098057_1015508


Overview

Basic Information
Taxon OID3300006926 Open in IMG/M
Scaffold IDGa0098057_1015508 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1937
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.61Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026716Metagenome197Y
F030564Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0098057_10155082F026716AGGAGVGQMFAVVDIHKSFIGCLSLPSMKNIKVPTESFESGRNSDIIKFVEELPEDVYSVIEAQYNKNENSDNRRQQLNTPNVLYSKSPVEKDQYTHGVPGK*
Ga0098057_10155084F030564N/AMISLPEDFVILKFFELGLYPKYNKFNNVYHCSCPICREGKSLGKKRRCYYIPKNENIFCHNCGWSGKPLRWIKEVSNSSDEEIIKELKEHIPSAEDIIEKDEKTKPTFKVETLPKDSINLSDKFQLDYYDSNNIVRAVRHLITERRLDTAVNKPEVLYVSLTDMVHKNRLIIPFFNERDEIEFYQTRTVLNKDKKTKPKYLG

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