Scaffold Ga0098034_1060539

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098034_1060539

Scaffold Ga0098034_1060539

Overview

Basic Information
Taxon OID	3300006927 Open in IMG/M
Scaffold ID	Ga0098034_1060539 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1107
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	160
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008649	Metagenome / Metatranscriptome	330	Y
F023448	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098034_10605392	F008649	N/A	MDFNKGRNKMTELETLMLDVTNTLNHNGFDEVKAVPNNTHFSIRVGYWDRIPASLIETMEEYHSIRITEHTWEDDDCGTLYRYLVEVVDEDTGYTLNELNELESNYTEEALYLESVGIGEDDEWGVA*
Ga0098034_10605393	F023448	GGAG	VSYSHDNVIDKLIKLNERIAVYLTNDEGKEKDLIWCQRLLTDVKDSGLVPSKEEFIMSNLMWHKYGVLPTERKTTEENMWKLVDSMLTQENPSKIGAIKMYRRFIDSTLKEAKEMVDA

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