NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098036_1001275

Scaffold Ga0098036_1001275


Overview

Basic Information
Taxon OID3300006929 Open in IMG/M
Scaffold IDGa0098036_1001275 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9533
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013821Metagenome268Y
F037942Metagenome167N
F103554Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0098036_100127510F037942GGAMSQQSLRQKSCRDESSITGTYNEDWMQVFINSGFTTGTFSERMLAYTNAQGSAWDNAQWDVSSWGSGPYTNVNEAMAQLGKQNGTTKPGSLWSQLGTFSAE*
Ga0098036_100127511F013821N/AMATNSEARQIAIRTVTSTTGMVNEDWLALFTARSIPAGTFNERLLAYINGELSTSYTDVNLALQAFATDQDDYNFSSMGTFTP*
Ga0098036_10012758F103554N/AMGWLSALGGIAKLASKIFGFVLMRKAVQADVMKEQLEDIRVADEVKKKINATSTADKRKRLRKFRRK*
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