NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079303_10525378

Scaffold Ga0079303_10525378


Overview

Basic Information
Taxon OID3300006930 Open in IMG/M
Scaffold IDGa0079303_10525378 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)513
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3769Long. (o)-82.5172Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010068Metagenome / Metatranscriptome309Y

Sequences

Protein IDFamilyRBSSequence
Ga0079303_105253781F010068N/AMNVKGSFFVTAKSVMIEVFGEDRWNVFMTKLAEKDKYFSKMIMSVSLIPVEKLIVIFDEMCKEFFDNDKMQYITFGRSGAKYALSPGGVYQSYLLSKDIKQFVEFALPKLWSTYYDGGTITTKLENNIVHIKITGVDVKYIYFEHLLMGYFQQALKVFGKKSVPK
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