Scaffold Ga0099822_1001266

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099822_1001266

Scaffold Ga0099822_1001266

Overview

Basic Information
Taxon OID	3300006943 Open in IMG/M
Scaffold ID	Ga0099822_1001266 Open in IMG/M
Source Dataset Name	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	28844
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (29.41%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location Name	California, USA
Coordinates	Lat. (^o)	34.0722	Long. (^o)	-118.4441	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028435	Metagenome	191	Y
F098769	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099822_100126621	F028435	AGG	MFLVPQISAKFEISLSSKLLKFSHSSFKMHEFSPFNQILLSLSDVSSAFHDSIYIIYTV*
Ga0099822_100126622	F028435	N/A	MSFKLDIGLNMFLVPQVSVNFGISLSSKLYKFSPPSFKMREFNPFNQILLSLSDVSNTFHDSI*
Ga0099822_10012669	F098769	N/A	MNQFNKVIHLFTEFKIFCNQMFCLDRKIKKYLKCMHFLKVFQLVKIEKIQIP*

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