NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073933_1000017

Scaffold Ga0073933_1000017


Overview

Basic Information
Taxon OID3300006945 Open in IMG/M
Scaffold IDGa0073933_1000017 Open in IMG/M
Source Dataset NameHot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC16 2012 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)391608
Total Scaffold Genes356 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)278 (78.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)49.9543Long. (o)-116.5155Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002916Metagenome / Metatranscriptome521Y
F011072Metagenome / Metatranscriptome295Y
F024517Metagenome / Metatranscriptome205Y
F062987Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0073933_1000017106F011072AGGMYYQLQWKTLPGLRGLSCSEFRAEPTAQPDPERGVAIELASEAERDALVRALEQQFAAQRFSNTAAAFEAVKSCVLDWVARRGAEGQQHRNS*
Ga0073933_1000017205F062987N/AMKNPHAVALGKLGGIARVFRTTPEQRRRWARRGGLARARRYSREQLSQWAKLGGRPRKKEGGA*
Ga0073933_10000177F024517N/AMYGLHTIQDVHRLVKAFAGVPDCFVPLKTRREISYPLSFRVPLSQVEEIDAAAAREKRKRRSDLLEAIWEVAWAEYKRAGSLEAYASGRRGRGYTRRVSEELQDQIFTAVELILERAPSAVIEELARKLTQWAGKYGSRR*
Ga0073933_100001792F002916GGAMQYLPGWTVQCVNPDCAARGHWLRADEAFPEFCSNCGAPLRNVPPPLAPRLRLRPRPLVGYRPPGRPRR*
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