Basic Information | |
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Taxon OID | 3300006954 Open in IMG/M |
Scaffold ID | Ga0079219_10033540 Open in IMG/M |
Source Dataset Name | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2056 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.8834 | Long. (o) | -83.4195 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002886 | Metagenome / Metatranscriptome | 523 | Y |
F018804 | Metagenome / Metatranscriptome | 233 | Y |
F023424 | Metagenome / Metatranscriptome | 210 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079219_100335401 | F018804 | N/A | EWKHRDVLYDSVAFSLGWLWIFVWPVVVVALPAAIILHVKYRKSPSSYLIPRSAWRFWMAYVGFAWLPLLIGGSILIPRLIGRH* |
Ga0079219_100335402 | F002886 | AGG | VSNIFRKISRIGRLSGPTKWYLSEDCLLAAKQMMYSVEYRRFYLRDLESIVVWPSRTWLLRPIIPGVFLIGLGSLLWHWVYFTAGAIVGGTGLAWMTLELALGPTAESRIRTMGTAVDLPLVKRTRRARKVLAKIDAAVRTNRVSVVERTTTPAVSPQPAEPAAQSSSETASAPSPIEDLT* |
Ga0079219_100335404 | F023424 | AGGCGG | MSEAVLHQPAAQSVRLVPARSRRNRLNPLEALERGFALFKSTFAREAWRYYAGTAPFVFCFIPIWVVDGQIRILNSVLLVQAALLAAAYMLRGWTVAKYMERVRERAFGVPTPRPAGALGRAAAMGRLLTWKITLSAAALVTLPSVAGASWFYSACQFATLESHEVATERHSLGGCLALATRWFGGGLLLFVMLSPLWIALWLNGLILATLLPQLLHSIFGVNTLLTTQMGVEALLQSSAFWLSLFAGAWVALDPIVKCTYVVIYQQLRSLREGDDLRGLLASLPREQQKKAE |
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