NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079219_10480516

Scaffold Ga0079219_10480516


Overview

Basic Information
Taxon OID3300006954 Open in IMG/M
Scaffold IDGa0079219_10480516 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Georgia to study Nitrogen management - GA Control
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)861
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.8834Long. (o)-83.4195Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081845Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0079219_104805161F081845N/ARLLRVLVAASLLLALLAGTVQAAGTVASPAGDPSVEGANLAWQQPGVGGFLRQNGTTAQLPGNNPAIGATFVAWHNGPQLTVADRASLTPLTVDSVPGVQTIAVSRSWLAYRTPTEIHVRPVAETGPGTTVVKVKSPAQLGRPALGVDLVVFHRATSEASWITAVNIRSGKRLQVRYSQDALLLNPSLDGGQVLYVKEARCSQQLRIGRLGGGGDHLLYEIGPLAGQDLGHERHHTSQGEHLPCPFKPRVTKKMLWTTALSPTTAYVTVLTPVNGGHTIPTLLAVA
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