NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098046_1003343

Scaffold Ga0098046_1003343


Overview

Basic Information
Taxon OID3300006990 Open in IMG/M
Scaffold IDGa0098046_1003343 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5070
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009991Metagenome / Metatranscriptome310Y
F071273Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0098046_10033431F071273N/ASNTILSRATILAAGAVYDTGTKQDFLLEGDFTSTINDFTSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVAVTIKTTFKYA*
Ga0098046_10033439F009991N/AMHYKSITYQLNSLRLGLVHEDNIYGKPTVFIAMGSQSPNIKIHMEIIKKYNQQGINVIAIPFDNNGSEPGDDYEVVAHYENILGFKSYVTEKINSSHRFFNDFGEPTTDFTEYHFDNKTKFVRKV*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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