NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102499_1138585

Scaffold Ga0102499_1138585


Overview

Basic Information
Taxon OID3300007000 Open in IMG/M
Scaffold IDGa0102499_1138585 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700(2)_T MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064749Metagenome / Metatranscriptome128N
F079733Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0102499_11385852F064749AGGAGGMNDYVLLCDGPKVALTTRSRAYLDDSFWQQFVRDRRLFFWDTDIMLTNLASGLRWFDVTQVATAHRHDNLLIRREAGAFIFDVVQNEIVSTIAMCEWKDGRLCPVPIYSSLKCDVILWEHLIDYWNDTYRQAVYDVYGLHAHGWAYHTLLLVYELFDAGKYDYARETLKSAIARAKMEGDNKLVAKFENLEQQFLAR*
Ga0102499_11385853F079733AGGAGMKDIIICDKGKVAFANASIWHLQDDNWFSEPMPAAQWREKCENELQRLCQSQHWIDVWSLPGDVSLPYDKRLTRVGQWCISRIDASYDDGRLRQLVIFTHFDGRVISETPTYMRGANDRLVKLVPGMEEYDDLWGFDDEGWLFYLEDVPRIWNNLYQRRLINAVADELLGLSLTMDWQGRLARLIRRLMSEGNYDDAIQVAACASARFEHEEWPGDNHFAVVRKQMMKVLATNEL*
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