NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079218_10074755

Scaffold Ga0079218_10074755


Overview

Basic Information
Taxon OID3300007004 Open in IMG/M
Scaffold IDGa0079218_10074755 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Utah to study Nitrogen management - NC Compost
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2223
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.7655Long. (o)-111.8143Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048551Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0079218_100747553F048551N/AMRRLPHEDDKSVELPTGYELDAAGTNLLLKRPSGFLIAAFGEGVSKDGIQHVAEADGRYLRAIQRQEEFGSAADSETVLMFAADVREARTEFLLTLEAVYRGEDVPPANDGPLAS*

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