NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102532_1093273

Scaffold Ga0102532_1093273


Overview

Basic Information
Taxon OID3300007094 Open in IMG/M
Scaffold IDGa0102532_1093273 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1209
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic Oscillatoriales Culture (M13A)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3991438Long. (o)103.77518Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036666Metagenome / Metatranscriptome169N
F039533Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0102532_10932731F039533N/AMSFKEPSRVWNVVSAMLEAEQPRSRNRARINAVFNGNPPYSAEEARDNRIQTNVNFLEGTRIIHAARQQFTNAFLKPQNYFSVGLDIGPRDKRTQWGNIITKQINRVMKRSAKYSTVLESQFAATVLHGIGPVTWLRDRDWCPSARGTEDILVPTNTLTSLDNLSHFAIYTSFTAQDLIRMTRGENVDHGWNLKLVNQLLAAMIQREATS
Ga0102532_10932732F036666N/AMYNQGFQAVARAAAKLRQTAQGARILAEWLGDGGVPVERQQAQDRIDTCNRCLHNKPTDARSITKTVAEAIIEQEEARNEMAMFLHGEGLAGTCDVCGCYLKLKVXPGRPEDAR*
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