NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101666_1003523

Scaffold Ga0101666_1003523


Overview

Basic Information
Taxon OID3300007113 Open in IMG/M
Scaffold IDGa0101666_1003523 Open in IMG/M
Source Dataset NameSeawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)2314
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029594Metagenome188Y
F032681Metagenome179Y
F053978Metagenome140Y
F087042Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0101666_10035233F053978AGGAGGMQINELKPEYKQIIREVVVELFKEVASKQTFGVSDDVLMLDEHLHDWTSRKLDKYKVNVYGVSLQEEY*
Ga0101666_10035234F029594GGAGMLPDEMEAEKNRKIIVAQADEIDILKNNVRDLQEQLTAAYIKIKKLKEDTNANQ*
Ga0101666_10035235F087042GGAGGMNIEQICIASFKSMFDERLEDGVDLTPKYIEMLVREHCEPYMIVTQGFTHDLLANALDYMNWEYIAYHIKHPVYRENKDAT*
Ga0101666_10035239F032681N/AMKVRALSKRLNLEVGMPTSMAVEDAMAYLLTSFQKRNVDSIKAAELLRWWLSDFQDEELEYFETRVNLANQVKLVDTRRKQA*
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