NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101672_1043306

Scaffold Ga0101672_1043306


Overview

Basic Information
Taxon OID3300007152 Open in IMG/M
Scaffold IDGa0101672_1043306 Open in IMG/M
Source Dataset NameSeawater microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', waterEBds3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)764
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameDobu 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.73665Long. (o)150.867667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F013897Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0101672_10433061F001026N/AELDDLELTALITHLEGQSEIMNESRLNSSNPHTPDREEILLNLVYTKVFTLAYQADKNPNLDYDLIQNQDRIYQNKLYPQVYTK*
Ga0101672_10433062F013897AGGMNLSKDQLIELMNTIDYATDNRYDYEKYTIIRSGTFDLEPIREILYNEYVNKGDS*

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