NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079302_1008812

Scaffold Ga0079302_1008812


Overview

Basic Information
Taxon OID3300007165 Open in IMG/M
Scaffold IDGa0079302_1008812 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2717
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008552Metagenome331Y
F013087Metagenome274Y
F021537Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0079302_10088121F021537GGAGMQTLEQKIKYLKKTIETLWHGVSETKEGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAINKQDTVWLFQAEKFAKR
Ga0079302_10088122F013087GGAVWIYFSKTGTGYELKGSDVISGFDAFINVDGTYMVEYAFSDMKNSMHFFIYEWDNSQKKRRTIFEGYQRENILVNFAKNVDICHLVRQAIYKEYLMDNEELELEKNANS*
Ga0079302_10088123F008552GGAGGLSSQAVKLFLQLYRRYGGHHTCKIFAIFFSLEISSYNRYNMSVMIISFEASASEDTTLFGYFSMEYDPEFFSDIKENLTDIPKNKPLAFKLDTDNVKLLQGAFHTIRRIICVPDIEQQKFTYVFNRNFKSGTAKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDVRFIDTIQNQFIKHQENMVN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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