Scaffold Ga0079302_1089983

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079302_1089983

Scaffold Ga0079302_1089983

Overview

Basic Information
Taxon OID	3300007165 Open in IMG/M
Scaffold ID	Ga0079302_1089983 Open in IMG/M
Source Dataset Name	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	652
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	40.178	Long. (^o)	-81.073	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042184	Metagenome	158	Y
F061577	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079302_10899832	F042184	AGG	MEFDIELYDLDIEINTWVEWEDDPDYSPDEGLYNKFNWVVYLQVGNNRIDITDELSAKECKQIEKQIEESIDDSI*
Ga0079302_10899833	F061577	N/A	MPRPKTEMTKSGKTIAVRATLSEWNEFKRLGGTKWLRQLLA

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