NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102976_1053832

Scaffold Ga0102976_1053832


Overview

Basic Information
Taxon OID3300007169 Open in IMG/M
Scaffold IDGa0102976_1053832 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5844
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F006841Metagenome / Metatranscriptome363Y
F078427Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0102976_10538323F006841AGGAGGLATTVYDVEEIKLQNGSTVQLRPLSIKQLRKFMAAMNKAQEATTENESLSVLIDACAIALETQLPDLVKDRDAMEEALDVPTINRILEICGGIKLDDPNLIAAAVLAGQN*
Ga0102976_10538325F000258GGAGMTANYKLDSMLELRKYLWGRMKTIGIFDEDAYWSDNLDETIVPIFPVQQTPEMSQFLSGKKHIVYDKIGVSYDTLWLICNEQILFTIYSTDFSEINEIRNFMIDEFRRMDESAKDINRSAGFNSDKFKFHSIYVADMSPTAPSEELQGFYTADVILELKYSRNTDSAGRFL*
Ga0102976_10538326F078427GGAMTSPKDGVLKQSLVAQISAYMYYNVQVISKLSTNAAFKNRFREVIFTQLDKDFGEFVDSQARIKPKSLHHVYEWRQVGDRSARLFKLNKLNTEGLGFSISYEFIPSKTFASAEGNRKHVFVSKASVMEAGMPLKIAPRHSKRLVFETNGYTVFMPEGASVTVKRPGGPSVKNSFMMTYSRFFKSNLVNISIKNSGFQKLFNRSMSQALKVPSEIRTIKYSFNPNTLSIQADAALASAFGAAL*
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