NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102977_1006404

Scaffold Ga0102977_1006404


Overview

Basic Information
Taxon OID3300007171 Open in IMG/M
Scaffold IDGa0102977_1006404 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1046
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F047643Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0102977_10064041F000450GAGGVGDRANFGFVQPNGNTIVLYGHWAGHNMLENLAEAVAKAQGRWSDPSYATRIVVSQMIGDGWGFETGWGLHVNEIGDNEHKIPVIDWAQQTFSLHSEDSFFNEDNKVRGMSNDAIFTMDLRTFVEKYTDVPLLV*
Ga0102977_10064043F001043AGGAGGMSDYSEGFQDGYKHAREEIVERLREIPVDEIDSWLLDKLADMVEGGKL*
Ga0102977_10064044F047643N/AMYYQLKASTGAALKAAYWEAEFAGLDPYWLGQNVFELGTGNIEKVSSLISKYKLDILVESDYQPTGYRR*
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