NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102977_1039190

Scaffold Ga0102977_1039190


Overview

Basic Information
Taxon OID3300007171 Open in IMG/M
Scaffold IDGa0102977_1039190 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4271
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F002487Metagenome / Metatranscriptome554Y
F044441Metagenome154Y
F063703Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0102977_10391901F063703N/ATQELRRKARKLYNNSQVPQEVNQYNQRKWVRAVLKLGDKWLVAKQVGRIQ*
Ga0102977_103919011F044441N/AKLSDQETKLRKAQDEIAKKQSAMHELARTGRLRLPTASCPQASPSASTPTGNSDTTQSELERQTIEALIDIAAEGDKAIIKLNSCIASYNEVRTLVNGQ*
Ga0102977_10391902F002487AGTAGGMITREDAIKDLSHTLYCCYCCEPKTYGSCCQENHFVEFADLYEEDKEAMIEDYLKEE*
Ga0102977_10391909F000166GGAMANIPTQDDARLFAESVKKWQQVLSLGDWRIEKGQKPAKQAMASVEFTETARLAVYRLGDFGAEKITPESLDKTALHELLHIFLHDLMTVATDPKSSDEDIEMQEHRVINLLENLLTKDSNGRT*
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Institute for Fundamental Biomedical Research
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