NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102978_1048939

Scaffold Ga0102978_1048939


Overview

Basic Information
Taxon OID3300007177 Open in IMG/M
Scaffold IDGa0102978_1048939 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2278
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001900Metagenome / Metatranscriptome620Y
F073145Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0102978_10489391F073145AGGAGGMAQSVGNAKNILVGASPLFLSTIDINDSDYIANAEPGAGIAAGVGNVSVPAFASGVSYTTTLNGVNQEAGKFGYRNVGFTNNGLQITYNPTYDSVTVDQL
Ga0102978_10489392F000258GGAGGMTANYKLDAMLEIRKFLWNELKTRAIFDDEDYWSDNLDENIIPIVPVQQTAEMNQFLSGKKHIVYDKIGMSYEDNWAICCEQILFTIYSTDFSEINEIRNFMTDQFRRMDESAADINRWSGLSDKFKFHSIFIADISPTAPSEELQGFFSADVILEIKYSRIMDQVGRFL*
Ga0102978_10489393F001900GGAMLVQAASGLERLMAGSKGTVLKDSTVAQISAYLYYNASVISKLTQNKQFQSKFSATIFKQIDKDFGEYIDALARSKPKSLHHVYEWKRVGEKSARLFNLSLSSQDGLSFTISHSFKPSTSFVPASSKYRRRHVFANKAEVIEEGRSLVISPKHSERLVFESDGATVFMPVGKSVTVRRPGGTAATNQFKLAHRRFFIGQMVNNSIKRSGFQQMFNGAMAKALKLPTNIKRVQYSFSPNIVRGQADASLAAAFGGVL*
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