NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102978_1098258

Scaffold Ga0102978_1098258


Overview

Basic Information
Taxon OID3300007177 Open in IMG/M
Scaffold IDGa0102978_1098258 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1673
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045598Metagenome / Metatranscriptome152Y
F097205Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0102978_10982583F097205AGAAGMTVSVPFQQQFTWRKLGFLYFTNSLDYRSVLEQNPQWKVTELPPVGAQLRISPTANSSGTPGGLTQGSTIFGFAESNEADRIYPYSTAEEYDTALYRYNLQGVVDREALNGITFDSVAALTGIQNG*
Ga0102978_10982584F045598AGGAMATFSLGTSGVTPGAPGVYINEQAGQAAAAALADFSTVYMLVETEDDVPVTRFPFNTPIAISSLNDYKELIRVGNIVVPESRIPLLSYNCVNEFYQNAQVGDLRVVRVGTPNQIVEIE
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