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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007177 Open in IMG/M |
| Scaffold ID | Ga0102978_1378587 Open in IMG/M |
| Source Dataset Name | Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1640 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Singapore | |||||||
| Coordinates | Lat. (o) | 1.286816 | Long. (o) | 103.867024 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027756 | Metagenome / Metatranscriptome | 193 | N |
| F032548 | Metagenome / Metatranscriptome | 179 | Y |
| F036564 | Metagenome / Metatranscriptome | 169 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0102978_13785874 | F027756 | GAG | MKLEDLIDRKILYLNYPINKYAIQEGKVTEISPAKMCMKINADWHLISNIRIIELFSEDERPKLGFGLPKNEKDAK* |
| Ga0102978_13785875 | F032548 | N/A | MKKTQNKVMEKAIKLLEELVYQADEDCPHDCRTMHFTNALEEASEFIKEYKNAK* |
| Ga0102978_13785876 | F036564 | AGGAG | MKLGRVCLDLNYIVDMDNDEMVKHAIESLYEDLMQGVKYDNISNWIDVIEDKNATEDMIPEFLLEKENE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |