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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007200 Open in IMG/M |
| Scaffold ID | Ga0103273_1112995 Open in IMG/M |
| Source Dataset Name | Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site B) 9 sequencing projects |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5485 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freashwater Reservoir, Singapore (Monthly Sampling) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Singapore | |||||||
| Coordinates | Lat. (o) | 1.286816 | Long. (o) | 103.77518 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021931 | Metagenome / Metatranscriptome | 216 | N |
| F050934 | Metagenome | 144 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0103273_11129951 | F021931 | N/A | SKDTSVYGTSDKFALALFQRSAPTLLAYGGTYANYTDMKIKNILPFAFPFGIGGPNMKRRVNVSLELCIQLYMRLSLKQFMEGPTILVLNHIYNRQMSYKTGVITCRSTIDGISLGEQLSTISTEDFEKINDKCNDHLNTPTKNFLRAISTSCKAMGHTEHTRRRCFAMLDYFGLNSLFLSTTPDDECSFRVRFYSKPHCWVSLYGKFRNGKNRVSSYLKIRNFPKRKIPYFLIIYRLSEF* |
| Ga0103273_11129954 | F050934 | N/A | MPPKHTLIIEAKITSSISNTTPQQVDKHLRHRIITSCGDANVMMGTKHIDPALCIYRGAYLICIDNKHLTEKVPRGNGTLCRVLGVKLTEGAKSYKCKNYYGKKVWTVNAEDVEWVQCEHVNKSSVITQLESQIKELEYQLNLKHHSNNKKMNTKLDELKNHLTNEMNLCKFKLEPEQFSPEVTVKHYHASSNIVFRCKMMQIPTNSNDATTGHKLQGMSKDAIIVSSWPTGKLSAMFKNWEYVVLSRVRTLSGLYLVNPIDMDKSFQPSPQLASYMDKIRKFEKDFLEKREVEISKYFPITIGYEPRMGITMG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |