NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103958_1132732

Scaffold Ga0103958_1132732


Overview

Basic Information
Taxon OID3300007212 Open in IMG/M
Scaffold IDGa0103958_1132732 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2744
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.409238Long. (o)103.907928Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015065Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0103958_11327323F015065N/AMTSTSSHQFRPICLQNDMRLGKNTEMKLFTLEYKYTNPNFDILSLININIHKLLYEVNKDIIDTIDIIPNSDDSTEYNIFYKFRDIGGDLGGLKTYMYVNTKIAKRFASNGNTEIIFTSKSVPFEGHSILQGQKYKLLEYPLYIQKFIYDETPDKTPANSTIQVLHMFKLKPDQETELTVAMENAIGILIKKMYFRLKVAMESLR*
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