NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103958_1177206

Scaffold Ga0103958_1177206


Overview

Basic Information
Taxon OID3300007212 Open in IMG/M
Scaffold IDGa0103958_1177206 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1438
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.409238Long. (o)103.907928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043913Metagenome / Metatranscriptome155Y
F054913Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0103958_11772061F043913AGGAMNRALDLMGNVDGGHHMVEVAFDVYDIANRIQRGDESGWRGDPSASLMFNPLINRFEVWMVDAMGTPYVAASHDRCDHTLIVKLIEGDWQKGKKLAEDMMKKNRAIHDAQQQAEKDKRQELADKLHWAIVKDLGHLDGGNRRQYSMATKGK*
Ga0103958_11772063F054913N/AGQIELTGLQTIVDDSAILHTINPSTQPKWKSYVNSNGGTNRSVTESLITGSIMKVLTNSGKKPSLLVSAEGVHLAISNLLLSLKRNMEQTELKGGFAGIQFYSPSVSGKGSEAPTVLYADFDCPNNRLYGINPEVLVYHQVGDGFQFMDLDGAVMNRKPDLDAYEATLYSYGELACKQRNAHFVIKDLTEVTI*
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